EDITORIAL
By Peter Harries-Jones,
co-editor SEED
The articles for Volume
2 of SEED arise from the Second Semiotics, Evolution, Energy conference held at
the University of Toronto in October 6, 7, 8/ 2001 entitled “The Integration of
Information Processing.” This current issue features a number of papers originally
delivered in separate session but which explore common themes, that of the
relation of information systems and semiosis to biological transitions and
evolution. The first article, by Daniel R. Books, explores information systems
in relation to thermodynamic entropy. His discussion of the dynamics of
information reiterates the suggestion that evolution is caused by the entropic
increase in biological information within genetic phase space. Brooks holds to
the general proposition that in a world controlled by the second law of
thermodynamics that there are fundamental trade-offs between energy used and
energy stored as structure - including both biomass and information systems.
Therefore biological information must have energetic cost and both costs and
benefits will be displayed in biological transitions and evolution. Since the
nature of the organism is most strongly embodied in phylogeny, the history of
descent with modification, all evolutionary explanations need to turn to the
study of phylogenetics in order to understand costs, benefits and evolutionary
strategies employed. Brooks treats phylogenesis as ‘retained history,’ arguing
that phylogenesis not only directly documents evolutionary mechanisms but
reveals how biological complexity is enabled, thus extending the time period
through which evolutionary experiments, leading to evolutionary transitions,
can occur.
Jack Maze and Cyril V.
Finnegan in their joint paper believe that there are still some problems
relating entropy and evolution, particularly that entropy increase still does
not account satisfactorily for the ‘relevant force’ that drives the increase of
living things. They prefer to tackle this issue from the perspective of
ontogenesis, the events an individual organism undergoes from inception to
death. They develop an insight of Taborsky that energy flows only through the
agency of the transformation of matter.
The inference they draw from Taborsky, is that information transfer
occurs concomitantly with the flow of energy along energy gradients, thus the
organism itself links flows of energy and information as it transforms matter.
A testable proposition emerging from this inference is that ontogenetic systems
that differ in the flow of energy and will also show differences related to
information. Maze and Finnegan consider the phenomenon of ‘emergence’ - common
to both ontogeny and phylogeny - and relate ‘emergence’ to experiments with
seedlings of Engelman spruce. They argue that if these experiments on emergence
among spruce seedlings continue to be confirmed, showing how the flow of energy
through an organized system is accompanied by a flow of information, then it
may be possible to derive a naturalistic account for irreversible biological
change. Despite the success of these experiments on emergence, the link between
ontogeny and phylogenesis still remains a daunting task.
Ulanowicz’s article is
both a complement to, and a query of the Maze-Finnegan approach through
ontogenesis. Semiotic agency seeks to describe some middle realm existing
between two extremes of the interpretation of natural order, strict mechanism
and pure chance. Ulanowicz argues that Popper’s ‘world of propensities’
embraces this middle ground in that it encompasses organized habitual
behaviours among a moderate number of elements that are loosely but
significantly coupled. What other aspects of the tacit and semiotic can be
derived from semiotic agency in information flow? Moreover can the tacit and
semiotic agency be linked to the quantitative aspects of information- theoretic
measures, thus yielding a prototype of a ‘quantitative semiotics?’. Ontogeny,
he maintains, resembles deterministic behaviour too closely and does not
illustrate well the interplay between the organized and the contingent that is
characteristic of ecosystems. He considers the ‘world of propensities’ in
relation to ‘habits arising’ in ecosystems. Ecosystems are a rich reservoir of
semiotic behaviours. They also generate an ecological metaphysics that does not
accord with the mechanistic assumptions of the Newtonian worldview. In effect, the ecological dynamic reveals
that any one event does not propagate universally and is always constrained by
selection processes at other levels. Only rarely does a novel event occur that
resonates with existing autocatalyic configuration and is embodied into the
kinetic structure. Yet the kinetic structures of biological processes acting
within the systems themselves can be said to select in favour of those changes
that augment their own selection capabilities. There is, therefore an aspect of
self-reference. Ulanowicz works out self selection in autocatalysis
demonstrating how it is possible to specify the interplay between the organized
and the contingent in a quantitative manner.
Andrade picks up another
characteristic of semiotic agents, their intrinsic informational activity being
evidently related to shape and form. He defines form as the process that gives rise to the
establishment, transfer and conservation of specific sets of non-random
interactions that materialize is a specific space-temporal arrangement
(pattern). Despite the breakthrough of
the molecular biology revolution in the 1950s with its notion that organisms
could be reduced to digitally encoded one-dimensional descriptions it is still
not clear how the three-dimensional shapes of forms become encoded in one
dimension. Andrade argues that it is not possible to understand digitally
recorded information without making reference to the whole network of
interactions that are characteristic of form. Informational records have a dual
nature, both analog and digital. In effect, entropic expansion only takes place
in natural informational systems that have code duality (see Hoffmeyer and
Emmeche). DNA centred arguments miss the importance of how analog information
systems drives evolution in a non-random way towards a higher degree of
organization. Using Peirce, he shows how Peirce’s triadic manners of being,
Firstness, Secondness and Thirdness, considered in the context of relations
between digital and analog informational spaces, overlap and interlock one to
another. Combining Peirce with the notion of code-duality, demonstrates that
while all possible digitally encoded worlds may have potential meaning, most
will remain meaningless unless their corresponding shape or analog version is
selected. Code duality is in turn related to the ‘work-actions’ of semiotic
agents.
Emmeche poses a
fundamental question: given the attempt to understand life processes as being
constituted of sign actions does signification and communication in biology
always presuppose an organism with quasi-semiotic functions? Symmetrically, are
functional relations conceivable without living sign action? In Emmeche’s view
the traditional paradigm in biology does not explain how meaning originates in
biological systems. Typically biologists will say that ‘genetic information’ is
just a metaphor for certain molecular processes that are organized in a certain
way. Traditional biologists may well recognize an implicit connection between
functional and informational aspects since cell organization could not exist
without genetic memory, but choose to interpret this functionally in terms of
parts and whole. For biosemiotics, functional processes have the nature of sign
production, sign transfer and sign interpretation, while genetic memory is
evidently a semiotic code. Biologists must begin to operate with the concept of
the organism as both a functional phenomena and as a system of sign processes,
since these two processes, the mereological and the semiotic, are both are
conditions for our knowledge of nature. The sceptical biologist may query
whether everything in the cell has the nature of a sign. Emmeche proposes that
any functional process or structure in the cell is ‘biologically meaningful’
where it makes a difference to the cell as a whole, as a system, if that
process were blocked or the structure destroyed. This is why biosemiotics
insists on a triadic interpretation of reference relationships, that is to say
biosemiotics holds to the proposition that any reference in which ‘function’ or
functional process includes the organization of the cell, is indeed a triadic
reference and semiotic. ‘Sign’ need not be a communicative sign in the normal
sense but may instead be purposeful process replete with triadic causality as
Peircian semiotics conceptualises. The
point of biosemiotics is to identify such triadic causal relationships in
organisms and interpret them as instances of abstract semiotic relationships.
Hoffmeyer gives an extensive
account of the origin of his and Emmeche’s thinking about code duality. A proposition that became fundamental to
their thinking was that the genome could not continue to be a privileged unit
in biology, nor could the organism. Instead, life was a property of linked
codes carried forward in time by the lineage in its interaction with changing
environments. The chain of events which sets life apart from non-life is the
unending chain of responses to selected differences which needs two codes, one for
action or behaviour and one code for memory. There were several precursors for
the idea of code-duality including Gregory Bateson’s drawing of a distinction
between analogic and digital and Howard Pattee’s distinction between linguistic
and dynamic modes of complex systems. Hoffmeyer and Emmeche’s conception of
code duality transgressed the Neumann-Pattee thesis by claiming that the
linguistic or symbolic mode, and the dynamic mode, are both semiotic modes;
therefore, they posited two different kinds of semiotic coding - digital for
the ‘linguistic mode’ and analog for ‘the dynamic.’ Their concept of
code-duality should not be taken in the narrow sense of information theory but
in the sense of modern semiotics, as a meaning potential enabling certain kinds
of meaning to be made in that code. The ‘duality’ is by no means absolute, for
analog codes may eventually end up by becoming part of higher order digital
codes. However, it is important to recognize that punctuation, which is the
core of digitality, is not inherent to the molecule or to biological process
but is always conferred by evolutionary processes preparing a contextual
setting. Finally, the concept of code-duality advances the idea of Gregory
Bateson that evolution, like both animal and human communication, is deeply
dependent on paralinguistic and paralogical settings.
May 2002